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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
470
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
179
August, 2021
163
June, 2019
101
February, 2021
82
February, 2023
47
September, 2023
46
July, 2019
40
May, 2022
29
March, 2020
25
October, 2019
21
November, 2019
19
April, 2020
19
August, 2017
16
November, 2018
14
May, 2023
8
January, 2021
8
October, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
389
bed narrowPeak
278
bam
256
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
54
fastq
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
831
Homo sapiens
Biosample type
833
tissue
562
primary cell
65
cell line
60
in vitro differentiated cells
7
stem cell
Organ
222
kidney
175
heart
99
pancreas
96
bone element
53
blood vessel
53
vasculature
49
limb
48
musculature of body
43
artery
39
brain
36
liver
35
eye
20
lung
18
adipose tissue
18
connective tissue
18
ureter
13
epithelium
12
skeleton
5
spleen
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
745
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
367
GRCh38
324
hg19
Lab
603
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
total RNA-seq
ChIP-seq
BIOSAMPLE
ASSAY
833 results
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ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
75
13
64
6
1
1
1
islet of Langerhans
68
1
7
4
3
1
1
4
bone element
84
coronary artery
36
2
heart left ventricle
2
3
18
4
1
1
1
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