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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
910
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
27
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
910
DNA binding
470
DNA accessibility
192
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
179
August, 2021
163
June, 2019
115
May, 2019
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
51
December, 2017
50
May, 2020
47
September, 2023
46
July, 2019
40
May, 2022
40
May, 2024
35
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
1
May, 2021
Available data
1003
bam
986
bed narrowPeak
874
bigWig
561
bigBed narrowPeak
278
fastq
238
tagAlign
213
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
149
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1739
Homo sapiens
Biosample type
1740
tissue
841
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
298
heart
249
kidney
248
brain
216
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
93
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1658
AMP
47
KPMP
24
T1D
19
LungMap
2
community
Genome assembly (visualization)
960
GRCh38
856
hg19
1
hg18
Lab
1478
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1750 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
1
3
1
1
1
islet of Langerhans
71
68
1
4
7
3
1
1
4
bone element
84
heart left ventricle
35
2
3
18
1
4
1
1
+ See 169 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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