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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
847
ChIP-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
847
DNA binding
468
DNA accessibility
190
Transcription
36
DNA methylation
16
3D chromatin structure
Target of assay
587
histone modification
586
histone
307
narrow histone mark
279
broad histone mark
179
control
83
transcription factor
23
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
179
August, 2021
163
June, 2019
115
May, 2019
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
30
March, 2020
22
October, 2017
21
November, 2019
19
April, 2020
17
November, 2018
14
May, 2023
8
January, 2021
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
976
bam
930
bed narrowPeak
815
bigWig
548
bigBed narrowPeak
250
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
144
tsv
98
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1666
Homo sapiens
Biosample type
1675
tissue
841
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
258
heart
249
kidney
248
brain
216
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1585
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
901
GRCh38
839
hg19
Lab
1445
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
organ_slims!
spleen
BIOSAMPLE
ASSAY
1675 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
3
1
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
bone element
84
heart left ventricle
35
2
3
18
4
1
1
1
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