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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
219
DNA accessibility
189
Transcription
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
134
May, 2022
100
May, 2020
48
July, 2018
46
February, 2021
43
April, 2018
43
September, 2020
26
August, 2017
24
May, 2021
18
July, 2019
12
February, 2023
11
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
461
bigWig
459
bam
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
546
Homo sapiens
Biosample type
756
tissue
546
primary cell
145
cell line
126
in vitro differentiated cells
8
stem cell
Organ
207
epithelium
197
pancreas
14
vasculature
12
blood vessel
12
connective tissue
10
brain
9
vein
8
blood
8
bodily fluid
8
kidney
4
musculature of body
3
heart
3
liver
2
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
289
AMP
232
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
188
hg19
125
GRCh38
Lab
286
AMP-T2D consortium
232
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
25
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
546 results
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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
12
29
6
31
1
pancreatic beta cell
12
16
6
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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