Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
312
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
312
DNA binding
190
Transcription
81
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
129
August, 2017
115
August, 2021
93
February, 2021
69
October, 2019
47
September, 2023
39
July, 2019
29
March, 2020
29
October, 2018
24
November, 2017
23
May, 2020
22
May, 2019
19
April, 2020
19
February, 2023
15
April, 2019
14
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
1000
bam
bed narrowPeak
831
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
753
Homo sapiens
Biosample type
756
tissue
546
primary cell
145
cell line
126
in vitro differentiated cells
8
stem cell
Organ
125
heart
96
kidney
93
pancreas
88
bone element
79
connective tissue
78
adipose tissue
78
liver
56
brain
26
blood vessel
26
musculature of body
26
vasculature
23
limb
20
lung
11
nerve
11
spleen
9
artery
7
eye
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
668
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
76
hg19
74
GRCh38
Lab
628
AMP-T2D consortium
47
KPMP
29
Katalin Susztak, Upenn
22
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
756 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
51
31
7
4
3
1
4
kidney
7
64
11
6
1
1
bone element
84
liver
63
1
3
1
1
1
1
subcutaneous abdominal adipose tissue
35
3
+ See 80 more…
See all biosamples
Download