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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
13
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
180
August, 2017
147
February, 2021
139
August, 2021
136
May, 2022
124
May, 2020
95
October, 2019
93
November, 2017
84
May, 2021
57
July, 2019
48
July, 2018
47
February, 2023
47
September, 2023
46
March, 2020
43
April, 2018
43
September, 2020
29
October, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
November, 2018
14
May, 2023
11
October, 2017
10
November, 2020
8
February, 2018
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
January, 2019
4
November, 2019
4
October, 2022
3
June, 2018
1
August, 2022
1
September, 2018
Available data
bed narrowPeak
98
tsv
64
xls
34
bam
32
bigWig
24
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
138
Homo sapiens
Biosample type
115
tissue
13
cell line
10
in vitro differentiated cells
1
primary cell
Organ
92
heart
17
kidney
9
liver
6
blood vessel
6
vasculature
3
connective tissue
3
epithelium
3
pancreas
2
artery
1
adipose tissue
Project
139
AMP
Genome assembly (visualization)
4
hg19
Lab
110
AMP-T2D consortium
15
Katalin Susztak, Upenn
12
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
139 results
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Clear Filters
single cell RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
6
1
+ See 11 more…
cell line
HepG2
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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