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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
total RNA-seq
76
snATAC-seq
50
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
145
Transcription
126
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
18
February, 2023
17
May, 2021
16
January, 2021
5
March, 2023
3
October, 2022
Available data
153
zippedFastqFolder
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
77
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
339
Homo sapiens
Biosample type
247
primary cell
88
tissue
7
cell line
2
stem cell
Organ
110
pancreas
89
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
222
HPAP
51
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
222
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bigWig
award.project!
AMP
BIOSAMPLE
ASSAY
344 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
31
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
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tissue
kidney
47
lung
9
10
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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