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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
250
pancreas
174
kidney
168
epithelium
166
heart
139
liver
107
connective tissue
97
bone element
78
vasculature
77
blood vessel
63
adipose tissue
54
artery
52
brain
36
eye
28
limb
26
musculature of body
20
lung
14
blood
14
bodily fluid
12
skeleton
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
6
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
gastrocnemius medialis
4
psoas muscle
2
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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