Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
78
ChIP-seq
27
snATAC-seq
22
ATAC-seq
13
WGBS
12
single cell RNA-seq
9
DNase-seq
3
snDrop-seq
2
pCHi-C
1
FAIRE-seq
Assay category
78
DNA binding
59
DNA accessibility
13
DNA methylation
12
Transcription
Target of assay
69
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
164
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2023
46
September, 2018
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
133
fastq
114
bam
96
bed narrowPeak
89
txt
86
bigWig
73
bigBed narrowPeak
14
tsv
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
8
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
csv
4
bed bedgraph
2
bed bed3
Organism
251
Homo sapiens
Biosample type
121
tissue
79
cell line
47
primary cell
4
in vitro differentiated cells
Organ
92
bone element
55
liver
15
blood
15
bodily fluid
14
artery
14
blood vessel
14
heart
14
vasculature
13
pancreas
9
spleen
8
skeleton
7
connective tissue
6
epithelium
6
limb
3
kidney
2
brain
1
adipose tissue
Project
206
AMP
45
HPAP
Genome assembly (visualization)
102
GRCh38
100
hg19
Lab
206
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
files.file_type!
csv
BIOSAMPLE
ASSAY
251 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
single cell RNA-seq
DNase-seq
snDrop-seq
pCHi-C
FAIRE-seq
tissue
bone element
84
spleen
6
2
1
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 14 more…
cell line
HepG2
45
1
1
1
GM12878
15
smooth muscle cell of the coronary artery
6
8
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
See all biosamples
Download