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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
38
ATAC-seq
9
DNase-seq
total RNA-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
93
DNA binding
48
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
4
RNA binding protein
4
transcription factor
Date released
50
May, 2019
47
October, 2019
35
February, 2023
February, 2021
6
August, 2021
6
July, 2019
5
June, 2019
3
March, 2020
3
November, 2017
Available data
117
bed narrowPeak
108
bam
88
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
7
tsv
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
155
Homo sapiens
Biosample type
126
tissue
29
primary cell
Organ
599
liver
537
pancreas
387
epithelium
307
heart
286
kidney
269
brain
204
connective tissue
161
vasculature
155
blood vessel
109
limb
93
adipose tissue
90
musculature of body
71
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
117
GRCh38
89
hg19
Lab
155
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
files.file_type!
csv
month_released!
February, 2021
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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