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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
13
Transcription
1
DNA accessibility
Date released
89
February, 2021
8
August, 2021
1
May, 2022
1
October, 2022
Available data
1940
bam
1713
bigWig
1645
bed narrowPeak
1025
bigBed narrowPeak
989
fastq
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
275
tsv
246
bed bed3+
153
zippedFastqFolder
99
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
98
Homo sapiens
Biosample type
98
tissue
in vitro differentiated cells
1
cell line
Organ
84
bone element
13
kidney
1
musculature of body
Project
99
AMP
Genome assembly (visualization)
1
hg19
Lab
91
AMP-T2D consortium
8
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
6
audit script error
assay_title!
total RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
99 results
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RNA microarray
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
13
skeletal muscle tissue
1
cell line
MIN6
1
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