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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
207
DNA binding
102
Transcription
76
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
97
May, 2021
48
July, 2018
47
June, 2019
46
September, 2018
43
April, 2018
42
August, 2017
20
October, 2019
7
August, 2020
6
November, 2017
5
July, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
November, 2020
1
February, 2021
1
March, 2023
Available data
375
bam
369
bigWig
261
bed narrowPeak
201
fastq
105
bigBed narrowPeak
102
tsv
98
tagAlign
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
386
Homo sapiens
Biosample type
882
tissue
386
primary cell
360
cell line
138
in vitro differentiated cells
3
stem cell
Organ
185
epithelium
164
pancreas
22
connective tissue
22
kidney
20
vasculature
16
blood vessel
14
brain
12
vein
10
musculature of body
6
heart
6
liver
3
eye
1
adipose tissue
Project
291
AMP
84
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
476
hg19
386
GRCh38
Lab
291
AMP-T2D consortium
84
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
32
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
386 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
13
pancreatic alpha cell
7
12
13
pancreatic beta cell
7
12
10
pancreatic ductal cell
13
10
4
pancreatic acinar cell
8
12
5
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