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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
477
DNA binding
331
DNA accessibility
191
Transcription
58
DNA methylation
14
3D chromatin structure
Target of assay
349
histone
349
histone modification
178
broad histone mark
170
narrow histone mark
72
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
199
May, 2021
134
May, 2022
127
August, 2017
100
May, 2020
55
June, 2019
51
February, 2021
48
July, 2018
47
September, 2018
43
April, 2018
43
December, 2017
43
September, 2020
39
August, 2021
38
October, 2019
24
February, 2018
24
February, 2023
18
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
7
March, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
August, 2018
4
January, 2018
3
June, 2018
3
October, 2022
2
December, 2019
2
November, 2020
1
March, 2023
1
November, 2018
Available data
623
bam
593
bigWig
427
bed narrowPeak
415
fastq
153
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
124
tsv
60
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
1099
Homo sapiens
Biosample type
1647
tissue
841
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
335
epithelium
268
pancreas
117
connective tissue
35
vasculature
30
kidney
29
blood vessel
24
liver
23
embryo
22
vein
21
brain
13
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
1
bone element
1
bone marrow
Project
758
AMP
232
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
646
hg19
524
GRCh38
4
hg18
Lab
676
AMP-T2D consortium
232
Klaus Kaestner, Upenn
183
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
1
ITG
Audit category:
76
inconsistent ontology term
33
audit script error
Audit category:
50
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
1099 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
+ See 86 more…
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 19 more…
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