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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
859
ChIP-seq
185
ATAC-seq
178
DNase-seq
163
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
859
DNA binding
389
DNA accessibility
179
Transcription
38
DNA methylation
15
3D chromatin structure
Target of assay
623
histone modification
622
histone
322
narrow histone mark
300
broad histone mark
175
control
63
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
101
February, 2021
100
August, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
40
May, 2024
31
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
952
bam
884
bed narrowPeak
835
bigWig
525
bigBed narrowPeak
238
tagAlign
226
fastq
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
90
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1590
Homo sapiens
Biosample type
1599
tissue
841
primary cell
549
cell line
215
in vitro differentiated cells
7
stem cell
Organ
298
heart
248
brain
216
pancreas
156
kidney
143
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1509
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
846
GRCh38
816
hg19
Lab
1422
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
lab.title!
Katalin Susztak, Upenn
month_released!
December, 2017
BIOSAMPLE
ASSAY
1599 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
68
1
4
7
3
1
1
4
liver
107
20
2
1
3
1
1
1
1
kidney
27
13
53
1
1
bone element
84
heart left ventricle
35
2
3
18
4
1
1
1
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