Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
total RNA-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
26
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
27
Homo sapiens
Biosample type
25
cell line
2
tissue
Organ
22
liver
2
kidney
2
pancreas
Project
27
AMP
Genome assembly (visualization)
17
hg19
GRCh38
Lab
1034
AMP-T2D consortium
222
Klaus Kaestner, Upenn
144
Kyle Gaulton, UCSD
47
KPMP
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
18
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
27 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
Download