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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
52
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
100
DNA accessibility
85
Transcription
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
45
February, 2021
43
September, 2020
7
August, 2020
3
March, 2019
3
October, 2022
Available data
153
zippedFastqFolder
78
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
235
Homo sapiens
Biosample type
232
primary cell
3
tissue
Organ
102
pancreas
99
epithelium
Project
232
HPAP
3
AMP
Genome assembly (visualization)
11
GRCh38
4
hg19
Lab
2665
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
235 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
3
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