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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
total RNA-seq
36
ATAC-seq
17
pCHi-C
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
46
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
18
February, 2023
18
May, 2022
8
January, 2021
2
March, 2019
Available data
132
bed narrowPeak
122
bigWig
103
bam
84
tagAlign
19
fastq
1
bed broadPeak
Organism
222
Homo sapiens
Biosample type
133
primary cell
42
in vitro differentiated cells
42
tissue
5
cell line
Organ
41
pancreas
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
127
T1D
95
AMP
Genome assembly (visualization)
141
hg19
85
GRCh38
Lab
2604
AMP-T2D consortium
232
Klaus Kaestner, Upenn
220
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
222 results
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ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
31
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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