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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
total RNA-seq
11
single cell RNA-seq
6
snATAC-seq
2
Capture-C
1
Hi-C
Assay category
86
DNA accessibility
11
Transcription
1
3D chromatin structure
Date released
83
August, 2021
14
May, 2023
3
February, 2023
Available data
68
bed narrowPeak
64
xls
11
txt
5
bigWig
3
bed bedgraph
2
bed bed3+
1
hic
Organism
100
Homo sapiens
Biosample type
93
tissue
7
in vitro differentiated cells
Organ
93
kidney
4
connective tissue
Project
100
AMP
Genome assembly (visualization)
75
GRCh38
8
hg19
Lab
2665
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
100 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
75
11
6
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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