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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
108
single cell RNA-seq
88
ChIP-seq
55
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
112
Transcription
88
DNA binding
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
May, 2022
102
May, 2021
47
September, 2023
45
February, 2021
43
September, 2020
19
April, 2020
18
February, 2023
16
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
77
fastq
19
zippedFastqFolder
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
303
Homo sapiens
Biosample type
207
primary cell
90
tissue
9
cell line
2
stem cell
Organ
47
kidney
44
pancreas
21
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
139
T1D
98
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
135
Kyle Gaulton, UCSD
98
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
May, 2022
award.project!
AMP
BIOSAMPLE
ASSAY
308 results
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Clear Filters
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
Langerhans cell
52
27
pancreatic alpha cell
7
6
1
peripheral blood mononuclear cell
8
pancreatic beta cell
3
1
+ See 16 more…
tissue
kidney
47
islet of Langerhans
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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