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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
106
ATAC-seq
50
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
108
DNA accessibility
50
DNA binding
27
DNA methylation
21
Transcription
8
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
133
bam
113
bigWig
50
tagAlign
34
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
22
tsv
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
215
Homo sapiens
Biosample type
118
primary cell
96
tissue
1
cell line
Organ
57
liver
15
heart
14
brain
8
epithelium
8
musculature of body
7
vasculature
6
blood vessel
6
kidney
5
connective tissue
5
limb
4
pancreas
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
215
AMP
Genome assembly (visualization)
119
hg19
54
GRCh38
Lab
215
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ATAC-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 40 more…
tissue
liver
50
1
heart left ventricle
2
1
4
gastrocnemius medialis
4
right lobe of liver
2
1
aorta
2
+ See 24 more…
cell line
HepG2
1
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