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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
total RNA-seq
22
snATAC-seq
Assay category
120
DNA binding
99
DNA accessibility
41
DNA methylation
34
Transcription
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
138
bam
135
bed narrowPeak
134
zippedFastqFolder
117
bigWig
97
bigBed narrowPeak
18
fastq
1
bed bed3+
1
txt
Organism
294
Homo sapiens
Biosample type
155
tissue
139
primary cell
Organ
100
pancreas
85
epithelium
50
blood vessel
50
vasculature
28
brain
21
heart
20
liver
9
musculature of body
7
limb
5
artery
5
kidney
Project
160
AMP
134
HPAP
Genome assembly (visualization)
136
hg19
96
GRCh38
Lab
134
Klaus Kaestner, Upenn
122
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
month_released!
February, 2023
BIOSAMPLE
ASSAY
294 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
liver
20
islet of Langerhans
18
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 9 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
kidney epithelial cell
5
pancreatic acinar cell
4
See all biosamples
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