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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
ChIP-seq
total RNA-seq
22
snATAC-seq
Assay category
286
DNA accessibility
41
DNA methylation
34
Transcription
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
bed narrowPeak
236
bam
230
bigWig
210
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
134
zippedFastqFolder
18
fastq
1
txt
Organism
392
Homo sapiens
Biosample type
203
tissue
189
primary cell
Organ
102
pancreas
100
epithelium
81
kidney
45
musculature of body
35
heart
32
limb
30
brain
22
liver
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
258
AMP
134
HPAP
Genome assembly (visualization)
226
hg19
210
GRCh38
Lab
220
AMP-T2D consortium
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
392 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
tissue
liver
20
heart
18
islet of Langerhans
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 21 more…
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