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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
67
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
6
control
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
314
November, 2017
159
August, 2017
93
December, 2017
85
November, 2018
58
October, 2018
48
July, 2018
45
February, 2021
38
April, 2018
35
December, 2018
25
January, 2019
25
September, 2020
24
February, 2018
18
May, 2022
15
September, 2018
13
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
85
fastq
84
bam
78
bigWig
71
bed narrowPeak
71
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
85
Homo sapiens
Biosample type
58
cell line
26
tissue
1
primary cell
Organ
50
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
85
AMP
Genome assembly (visualization)
77
GRCh38
69
hg19
Lab
85
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
assay_title!
total RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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