Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
8
DNase-seq
5
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
64
DNA binding
9
DNA accessibility
5
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
control
Date released
324
November, 2017
198
August, 2017
94
December, 2017
79
November, 2018
58
October, 2018
48
July, 2018
47
September, 2018
45
February, 2021
38
April, 2018
28
December, 2018
25
September, 2020
24
February, 2018
18
January, 2019
18
May, 2022
16
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
79
fastq
78
bam
74
bigWig
69
bed narrowPeak
69
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
79
Homo sapiens
Biosample type
61
cell line
17
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
79
AMP
Genome assembly (visualization)
73
GRCh38
67
hg19
Lab
79
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
spleen
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
omental fat pad
1
+ See 1 more…
primary cell
pancreatic cell
1
See all biosamples
Download