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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
15
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
85
DNA binding
25
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
112
fastq
102
bam
101
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
118
Homo sapiens
Biosample type
61
cell line
49
tissue
8
primary cell
Organ
53
liver
19
pancreas
18
brain
15
blood
15
bodily fluid
10
spleen
7
epithelium
2
adipose tissue
2
connective tissue
Project
111
AMP
7
HPAP
Genome assembly (visualization)
100
GRCh38
84
hg19
Lab
110
AMP-T2D consortium
7
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
brain
15
2
spleen
6
1
1
2
body of pancreas
4
2
2
liver
4
2
pancreas
2
1
+ See 4 more…
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
pancreatic cell
1
See all biosamples
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