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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
44
ChIP-seq
21
ATAC-seq
10
MeRIP-seq
1
pCHi-C
Assay category
44
DNA binding
21
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
11
control
10
broad histone mark
5
RNA binding protein
5
nucleotide modification
Date released
397
November, 2017
263
August, 2017
252
October, 2019
241
August, 2021
163
June, 2019
123
February, 2021
115
May, 2019
100
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
66
May, 2021
51
May, 2020
48
March, 2020
47
September, 2023
46
July, 2019
41
November, 2019
40
May, 2022
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
11
bigWig
7
bam
6
bed narrowPeak
6
tagAlign
Organism
76
Homo sapiens
Biosample type
primary cell
48
in vitro differentiated cells
23
cell line
5
tissue
Organ
30
pancreas
26
epithelium
1
thymus
Project
74
AMP
2
T1D
Genome assembly (visualization)
11
hg19
6
GRCh38
Lab
43
Kyle Gaulton, UCSD
23
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
26
inconsistent ontology term
assay_title!
total RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
cardiomyocytes
3
pancreatic PP cell
3
cell line
EndoC_BH1
1
16
6
tissue
islet of Langerhans
4
thymus
1
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