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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
10
MeRIP-seq
5
ATAC-seq
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
80
DNA binding
6
DNA accessibility
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
19
control
6
transcription factor
5
nucleotide modification
4
RNA binding protein
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
bam
67
bed narrowPeak
66
bigWig
65
bigBed narrowPeak
2
bed broadPeak
1
bed bed3+
1
bedpe
1
bigBed broadPeak
1
fastq
1
hic
Organism
97
Homo sapiens
Biosample type
89
tissue
6
cell line
2
primary cell
Organ
57
heart
23
kidney
15
pancreas
6
epithelium
2
connective tissue
Project
97
AMP
Genome assembly (visualization)
70
hg19
68
GRCh38
Lab
82
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
97 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
Hi-C
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
islet of Langerhans
4
4
1
cell line
EndoC_BH1
6
primary cell
osteoblast
1
1
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