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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
13
ATAC-seq
10
MeRIP-seq
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
15
DNA binding
14
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
8
control
5
nucleotide modification
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
18
bam
18
fastq
15
bigWig
14
bed narrowPeak
14
tagAlign
7
bigBed narrowPeak
6
bed broadPeak
1
bed bed3+
1
bedpe
1
bigBed broadPeak
1
hic
Organism
40
Homo sapiens
Biosample type
32
tissue
6
cell line
2
primary cell
Organ
20
pancreas
16
brain
6
epithelium
3
connective tissue
1
adipose tissue
1
spleen
Project
40
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
24
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
DNase-seq
Hi-C
tissue
brain
15
islet of Langerhans
5
4
1
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
1
1
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