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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
10
MeRIP-seq
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
406
DNA binding
2
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
76
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
394
bam
335
bigWig
324
fastq
315
bed narrowPeak
313
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
65
bigBed broadPeak
3
tar
1
bed bed3+
Organism
418
Homo sapiens
Biosample type
321
cell line
86
tissue
11
primary cell
Organ
315
liver
91
brain
12
epithelium
10
pancreas
6
vasculature
3
blood vessel
2
connective tissue
Project
418
AMP
Genome assembly (visualization)
283
hg19
282
GRCh38
Lab
408
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
418 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
315
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
osteoblast
1
1
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