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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
total RNA-seq
17
ATAC-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
Assay category
190
DNA binding
23
DNA accessibility
2
3D chromatin structure
Target of assay
161
histone
161
histone modification
129
narrow histone mark
32
broad histone mark
29
control
Date released
403
November, 2017
322
August, 2017
236
August, 2021
219
October, 2019
196
May, 2021
187
June, 2019
174
May, 2022
147
May, 2020
90
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
72
February, 2021
68
February, 2023
67
May, 2019
56
July, 2019
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
42
July, 2018
40
May, 2024
35
December, 2018
33
March, 2020
25
January, 2019
24
February, 2018
23
October, 2017
20
November, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
December, 2019
2
June, 2018
1
August, 2022
Available data
172
bam
146
bigWig
142
bed narrowPeak
49
tagAlign
37
bigBed narrowPeak
4
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
1
hdf5
1
hic
1
tagAlign bed3+
Organism
219
Homo sapiens
Biosample type
192
tissue
16
cell line
9
primary cell
2
in vitro differentiated cells
Organ
83
brain
65
limb
blood vessel
47
vasculature
38
nerve
31
epithelium
26
artery
21
vein
18
pancreas
14
kidney
7
eye
6
heart
5
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
219
AMP
Genome assembly (visualization)
149
hg19
145
GRCh38
Lab
219
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
total RNA-seq
organ_slims!
blood vessel
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
219 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
13
4
tibial nerve
35
1
2
heart
5
1
brain
5
liver
5
+ See 75 more…
cell line
Panc1
13
1
1
glomerular visceral epithelial cell
1
primary cell
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
kidney tubule cell
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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