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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
13
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
ChIP-seq
1
pCHi-C
Assay category
13
DNA accessibility
6
Transcription
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
397
November, 2017
263
August, 2017
235
August, 2021
226
October, 2019
160
June, 2019
109
February, 2021
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
66
May, 2021
65
February, 2023
65
May, 2019
51
May, 2020
47
September, 2023
46
March, 2020
42
July, 2019
41
November, 2019
40
May, 2022
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
89
txt
11
bam
10
bed narrowPeak
8
tsv
6
csv
4
bed bedgraph
2
tagAlign
1
bed bed3
1
bed bed3+
1
bigWig
Organism
109
Homo sapiens
Biosample type
101
tissue
primary cell
4
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
blood vessel
14
heart
14
vasculature
8
kidney
8
skeleton
6
limb
4
connective tissue
3
liver
Project
109
AMP
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
organ_slims!
blood vessel
biosample_type!
primary cell
BIOSAMPLE
ASSAY
109 results
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RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
cell line
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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