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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
48
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
275
DNA accessibility
259
DNA binding
189
Transcription
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
53
June, 2019
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
16
July, 2019
12
February, 2023
11
October, 2019
7
August, 2020
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2023
1
November, 2018
Available data
439
bigWig
434
bam
286
fastq
278
bed narrowPeak
153
zippedFastqFolder
120
tsv
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
29
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
804
Homo sapiens
Biosample type
1614
tissue
804
primary cell
474
cell line
258
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
471
AMP
232
HPAP
100
T1D
1
ITG
Genome assembly (visualization)
453
hg19
370
GRCh38
Lab
438
AMP-T2D consortium
232
Klaus Kaestner, Upenn
133
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
blood vessel
bodily fluid
BIOSAMPLE
ASSAY
804 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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