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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
280
DNA accessibility
267
DNA binding
184
Transcription
57
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
134
May, 2022
100
May, 2020
59
August, 2017
47
September, 2018
46
July, 2018
45
February, 2021
43
September, 2020
41
April, 2018
38
June, 2019
32
October, 2019
15
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
Available data
439
bigWig
433
bam
286
fastq
278
bed narrowPeak
153
zippedFastqFolder
115
tsv
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
812
Homo sapiens
Biosample type
1608
tissue
812
primary cell
549
cell line
170
in vitro differentiated cells
9
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
472
AMP
232
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
452
hg19
364
GRCh38
Lab
439
AMP-T2D consortium
232
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
812 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
CD8-positive, alpha-beta T cell
33
2
1
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