Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
179
DNA binding
9
DNA accessibility
9
DNA methylation
Target of assay
130
histone modification
129
histone
69
broad histone mark
60
narrow histone mark
36
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
406
November, 2017
280
October, 2019
240
August, 2021
216
May, 2021
200
June, 2019
197
August, 2017
174
May, 2022
164
February, 2021
151
May, 2020
120
May, 2019
102
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
59
July, 2019
51
October, 2018
47
March, 2020
47
September, 2018
47
September, 2023
46
July, 2018
43
September, 2020
41
April, 2018
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
126
fastq
122
bam
118
bigWig
96
bed narrowPeak
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
190
Homo sapiens
Biosample type
138
tissue
59
primary cell
Organ
connective tissue
99
pancreas
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
197
AMP
Genome assembly (visualization)
123
hg19
95
GRCh38
Lab
197
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
197 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
48
1
3
islet of Langerhans
42
1
1
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
Download