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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
13
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
13
Transcription
3
DNA accessibility
Date released
8
August, 2021
5
February, 2021
2
February, 2023
1
May, 2022
1
October, 2022
Available data
2019
bam
1820
bigWig
1754
bed narrowPeak
1104
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
265
bed bed3+
256
tsv
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
17
txt
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
14
tissue
2
in vitro differentiated cells
1
cell line
Organ
13
kidney
1
musculature of body
Project
17
AMP
Genome assembly (visualization)
3
hg19
Lab
8
Katalin Susztak, Upenn
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
assay_title!
total RNA-seq
organ_slims!
esophagus
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
17 results
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Clear Filters
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
13
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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