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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
total RNA-seq
25
ChIP-seq
22
snATAC-seq
Assay category
99
DNA accessibility
41
DNA methylation
34
Transcription
25
DNA binding
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
48
July, 2018
48
March, 2020
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
59
bed narrowPeak
43
bam
43
fastq
41
bigWig
21
bigBed narrowPeak
1
bed bed3+
1
txt
Organism
199
Homo sapiens
Biosample type
134
primary cell
47
tissue
18
cell line
Organ
98
pancreas
80
epithelium
20
liver
18
blood
18
bodily fluid
7
spleen
2
musculature of body
Project
134
HPAP
65
AMP
Genome assembly (visualization)
60
hg19
21
GRCh38
Lab
134
Klaus Kaestner, Upenn
27
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
total RNA-seq
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
islet of Langerhans
18
spleen
7
skeletal muscle tissue
1
1
cell line
GM12878
18
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