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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
6
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
56
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
November, 2018
Available data
44
bam
42
fastq
26
bigWig
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
86
Homo sapiens
Biosample type
85
tissue
1
in vitro differentiated cells
1
primary cell
Organ
579
liver
391
pancreas
290
epithelium
265
brain
234
heart
219
kidney
185
connective tissue
129
vasculature
123
blood vessel
107
limb
89
musculature of body
87
adipose tissue
85
bone element
68
blood
68
bodily fluid
40
artery
37
nerve
24
spleen
23
embryo
22
vein
20
lung
18
ureter
14
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
25
GRCh38
24
hg19
Lab
87
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
ATAC-seq
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
1
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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