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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
18
DNA binding
5
DNA accessibility
3
Transcription
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
16
August, 2017
5
October, 2018
3
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
28
bam
27
bigWig
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
3
tsv
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
28
Homo sapiens
Biosample type
27
tissue
1
primary cell
Organ
372
liver
305
pancreas
218
epithelium
212
brain
194
kidney
157
heart
133
vasculature
129
blood vessel
98
connective tissue
92
limb
74
artery
54
blood
54
bodily fluid
49
musculature of body
28
adipose tissue
27
nerve
18
ureter
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
28
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
white adipose tissue
12
omental fat pad
3
1
1
2
subcutaneous adipose tissue
2
1
1
adipose tissue
1
2
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
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