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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
23
DNA binding
7
DNA accessibility
3
Transcription
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
30
bam
26
fastq
13
bigWig
10
bed narrowPeak
8
bigBed narrowPeak
4
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
35
Homo sapiens
Biosample type
34
tissue
1
in vitro differentiated cells
1
primary cell
Organ
548
liver
444
pancreas
364
epithelium
294
kidney
281
heart
269
brain
175
vasculature
169
blood vessel
115
limb
97
bone element
85
artery
85
connective tissue
69
blood
69
bodily fluid
64
musculature of body
42
eye
38
nerve
36
adipose tissue
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
11
1
1
2
subcutaneous adipose tissue
12
1
1
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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