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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
112
ChIP-seq
35
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
112
DNA binding
43
DNA accessibility
12
DNA methylation
6
3D chromatin structure
6
Transcription
Target of assay
65
histone
65
histone modification
40
broad histone mark
30
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
83
August, 2017
44
June, 2019
23
October, 2018
11
July, 2019
7
May, 2019
4
March, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
100
bam
94
bigWig
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
46
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
7
tsv
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
182
Homo sapiens
Biosample type
168
tissue
14
primary cell
1
in vitro differentiated cells
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
183
AMP
Genome assembly (visualization)
99
hg19
77
GRCh38
Lab
183
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
183 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
omental fat pad
11
2
1
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
mesenchymal stem cell of adipose
1
in vitro differentiated cells
white fat cell
1
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