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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
41
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
25
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
46
bam
43
fastq
28
bigWig
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
4
tsv
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
60
Homo sapiens
Biosample type
59
tissue
1
in vitro differentiated cells
1
primary cell
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
219
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
11
1
1
2
subcutaneous adipose tissue
12
1
1
1
white adipose tissue
12
adipose tissue
1
3
3
1
subcutaneous abdominal adipose tissue
5
3
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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