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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
total RNA-seq
46
ATAC-seq
8
DNase-seq
6
single cell RNA-seq
4
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
96
DNA binding
55
DNA accessibility
6
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
5
July, 2019
4
June, 2019
3
March, 2020
Available data
126
bed narrowPeak
118
bam
87
bigWig
76
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
7
tsv
6
tagAlign
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
164
Homo sapiens
Biosample type
126
tissue
24
primary cell
14
cell line
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
126
GRCh38
96
hg19
Lab
164
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
organ_slims!
brain
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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