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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
total RNA-seq
32
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
49
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
92
February, 2021
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
5
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
246
bam
217
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
84
txt
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
366
Homo sapiens
Biosample type
344
tissue
22
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
365
AMP
1
T1D
Genome assembly (visualization)
220
GRCh38
171
hg19
Lab
365
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
organ_slims!
skin of body
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
RNA microarray
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
+ See 87 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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