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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
43
ChIP-seq
34
DNase-seq
13
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
47
DNA accessibility
43
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
92
February, 2021
39
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
4
February, 2023
1
May, 2021
Available data
86
bam
84
txt
73
bed narrowPeak
66
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
180
Homo sapiens
Biosample type
179
tissue
1
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
179
AMP
1
T1D
Genome assembly (visualization)
77
hg19
73
GRCh38
Lab
179
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
artery
BIOSAMPLE
ASSAY
180 results
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RNA microarray
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
tibial nerve
35
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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primary cell
megakaryocyte
1
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