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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
35
ChIP-seq
13
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
35
DNA binding
15
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
92
February, 2021
38
October, 2019
4
February, 2023
1
May, 2021
Available data
84
txt
46
bam
35
bed narrowPeak
27
bigWig
26
bigBed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
134
tissue
1
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
134
AMP
1
T1D
Genome assembly (visualization)
39
hg19
35
GRCh38
Lab
134
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
135 results
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RNA microarray
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
bone element
84
tibial nerve
35
1
2
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
primary cell
megakaryocyte
1
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