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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
11
DNA binding
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
11
August, 2017
2
August, 2021
1
February, 2021
1
July, 2019
Available data
112
bam
97
fastq
85
bigWig
58
bed narrowPeak
22
tagAlign
15
bed bed3+
15
bigBed narrowPeak
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
hdf5
Organism
15
Homo sapiens
Biosample type
9
in vitro differentiated cells
4
tissue
2
primary cell
Organ
22
pancreas
15
connective tissue
8
liver
5
epithelium
4
adipose tissue
3
brain
3
embryo
2
blood vessel
2
vasculature
Project
15
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
total RNA-seq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
osteoblast
1
tissue
white adipose tissue
4
primary cell
brain pericyte
1
osteoblast
1
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