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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
26
DNA accessibility
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
9
February, 2023
6
February, 2021
4
August, 2021
3
July, 2019
2
April, 2018
2
July, 2018
2
November, 2020
2
October, 2019
1
August, 2018
1
March, 2020
1
May, 2021
Available data
80
bam
74
bigWig
62
bed narrowPeak
58
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
6
tsv
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
118
Homo sapiens
Biosample type
tissue
88
in vitro differentiated cells
29
primary cell
1
stem cell
Organ
411
liver
380
epithelium
327
pancreas
118
connective tissue
69
blood
69
bodily fluid
49
vasculature
45
kidney
43
blood vessel
23
embryo
23
heart
22
vein
21
brain
14
artery
13
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
117
AMP
1
T1D
Genome assembly (visualization)
92
hg19
71
GRCh38
Lab
113
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
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primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
2
1
1
pancreatic stellate cell
4
brain pericyte
1
1
+ See 3 more…
stem cell
mesenchymal stem cell
1
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