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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
19
ATAC-seq
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
56
DNA binding
26
DNA accessibility
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
16
June, 2019
9
February, 2023
6
February, 2021
4
August, 2021
3
July, 2019
2
April, 2018
2
July, 2018
2
November, 2020
2
October, 2019
1
August, 2018
1
March, 2020
1
May, 2021
Available data
57
bam
51
bigWig
44
bed narrowPeak
36
fastq
17
bigBed narrowPeak
15
bed bed3+
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
6
tsv
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
95
Homo sapiens
Biosample type
tissue
66
in vitro differentiated cells
28
primary cell
1
stem cell
Organ
371
epithelium
325
pancreas
112
liver
95
connective tissue
43
vasculature
38
blood vessel
36
kidney
22
vein
20
embryo
18
blood
18
bodily fluid
18
brain
18
heart
13
musculature of body
10
artery
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
94
AMP
1
T1D
Genome assembly (visualization)
69
hg19
48
GRCh38
Lab
90
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
assay_title!
total RNA-seq
biosample_type!
tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
45
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
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primary cell
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
osteoblast
2
1
1
pancreatic stellate cell
4
brain pericyte
1
1
+ See 3 more…
stem cell
mesenchymal stem cell
1
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