Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
total RNA-seq
19
ATAC-seq
7
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
80
DNA binding
26
DNA accessibility
4
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
46
histone
46
histone modification
24
broad histone mark
23
transcription factor
21
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
9
February, 2023
6
February, 2021
4
August, 2021
3
October, 2019
2
April, 2018
2
July, 2018
2
July, 2019
2
November, 2020
1
March, 2020
1
May, 2021
Available data
79
bam
73
bigWig
62
bed narrowPeak
57
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
5
tsv
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
117
Homo sapiens
Biosample type
87
in vitro differentiated cells
28
primary cell
1
stem cell
1
tissue
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
116
AMP
1
T1D
Genome assembly (visualization)
91
hg19
70
GRCh38
Lab
112
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
117 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
67
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
2
1
1
pancreatic stellate cell
4
brain pericyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
See all biosamples
Download