Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
49
ATAC-seq
47
WGBS
3
Hi-C
2
ChIP-seq
Assay category
49
DNA accessibility
47
DNA methylation
3
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
80
May, 2022
7
August, 2020
6
February, 2021
3
October, 2022
3
September, 2020
1
March, 2020
1
May, 2021
Available data
80
zippedFastqFolder
16
fastq
12
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
2
bam
2
bed narrowPeak
Organism
101
Homo sapiens
Biosample type
99
primary cell
2
cell line
Organ
124
pancreas
101
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
99
HPAP
2
T1D
Genome assembly (visualization)
12
GRCh38
5
hg19
Lab
99
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
assay_title!
total RNA-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
AMP
BIOSAMPLE
ASSAY
101 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
2
Download